7 Best Online Courses On Python And R For Bioinformatics

The rapid growth in biomedical data generated has put huge pressure on the healthcare industry to recruit highly skilled biomedical data scientists to help them unravel the potential to improve human health. Biomedical Data Scientists require a general working knowledge of principles of biomedical science, and basic mathematical skills. The skills required to become a biomedical data scientist will change overtime but one particular skill that remains highly valuable no matter what stage of technology we live in is – Programming Skills. It is important that the Biomedical Data Scientists should be fluent in at least one programming language - R or Python for complex data analysis of biomedical datasets. To help you acquire the necessary programming skills and advance in your career, here we have compiled the 7 Best Online Courses On Python And R For Bioinformatics. 

 

Online Training

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Located in San Diego, California, the University of California San Diego is one of the top 10 public universities as per the U.S. News and World Report. The course – “Biology Meets Programming: Bioinformatics for Beginners” offers a gently-paced introduction to the Bioinformatics Specialization, preparing learners to take the first course in the Specialization, "Finding Hidden Messages in DNA". With over 134,016 students enrolled, the course has an overall rating of 4.2/5.

 

Bioinformatics Course

 

The Biology Meets Programming: Bioinformatics for Beginners is designed to guide the learners through programming from the ground up and apply introductory topics in coding to solve real problems in modern biology. Through the “Learn Python" track on Codecademy, the following topics on Python are covered to help the learners understand the algorithms used for solving various biological problems- syntax, strings and console, conditionals and control flow to create programs that generate different outcomes, learn how to create and use functions, and data structures lists and dictionaries.    

 

To know more about the course structure and syllabus, visit the link - https://www.coursera.org/learn/bioinformatics 

 

Situated in Baltimore, Maryland, Johns Hopkins University is a private research university founded in 1876. The mission of the Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world. With more than 46,470 students enrolled, the course has an overall rating of 4.3/5.

 

Python for Genomic Data Science

 

The Python for Genomic Data Science is designed for learners who are not computer scientists but who want to analyze genomic data. It will teach the participants basic concepts of bioinformatics programming, and introduce them to computational tools that deal with large amounts of data to write basic programs in Python, adapt existing programs to their needs, and to interface Python programs with various bioinformatics packages through the use of Biopython. The topics covered in the course include data structures, Ifs, loops, functions, modules, packages and biopython. 

 

To know more about the course structure and syllabus, visit the link - https://www.coursera.org/learn/python-genomics?specialization=genomic-data-science 

Established in 1861, the Massachusetts Institute of Technology is a research university dedicated to advancing knowledge and educating students in science, technology, and other areas of scholarship that will best serve the world in the 21st century. The Massachusetts Institute of Technology MOOCs offer numerous online courses in a variety of subjects which can be audited for free by the students or they can choose to receive a verified certificate after payment. 

 

Quantitative Biology Workshop

 

The Quantitative Biology Workshop is designed to give learners an introduction to the application of quantitative tools to analyze biological data. The tools and programming languages covered during the course include MATLAB, PyMOL, Python, and R. The content will not teach any one language in a comprehensive manner as the course aims to give learners an introduction to multiple languages and tools to find a topic that they would want to explore more. The course will teach you how to apply quantitative methods to biological problems, define computational vocabulary, write Python, MATLAB, and R code to analyze biological data, examine any protein structure in PyMOL and analyze how to answer a scientific question through a step-by-step thought process.

 

To know more about the course structure and syllabus, visit the link - https://www.edx.org/course/quantitative-biology-workshop-3#:~:text=QBWx%3A%20Quantitative%20Biology%20Workshop%20is,for%20students%20from%20other%20universities

OmicsLogic is a training program developed by Pine Biotech in collaboration with the Tauber Bioinformatics Research Center from University of Haifa, Israel. OmicsLogic programs are developed using project-based content that is enriched with multimedia content. The programs are divided into 5-10 minute modules with videos, quizzes and assignments that can be completed independently. With more than 302 students enrolled, the course has an overall rating of 4.0/5. 

 

Getting started with Bioinformatics in Python

 

The Python Course 1: Getting Started with Bioinformatics is designed for undergraduate and graduate students from life science backgrounds with little or no prior knowledge of Python coding for bioinformatics. The topics covered in the course include loading data into Python and checking what type of data it contains; basic visualization packages including boxplots, scatterplots, histograms and bar plots; basics of DNA and how it can be translated to be read in Python for analysis; create your own complementary strands of DNA using Python. and finally you will learn about data science and the resources to get started.

 

To know more about the course structure and syllabus, visit the link -  https://learn.omicslogic.com/courses/course/python-course-1-getting-started-with-bioinformatics 


Established in 1948, the State University of New York is the largest comprehensive system of higher education in the United States, educating nearly 468,000 students in more than 7,500 degree and certificate programs both on-campus and online. With over 28,670 students enrolled, the course has an overall rating of 4.2/5.

Big Data , Genes and Medicine

 

The Big Data, Genes, and Medicine is designed for students from a diverse range of biological backgrounds The course will teach you build and develop R scripts for — preprocessing biomedical data, replace missing values, normalize data, discretize data, and sample data; evaluating the performance of feature selection methods, selecting features from datasets involving gene expressions, evaluating the performance of classification and prediction methods, classifying and predicting diseases from gene expressions, determining gene alterations and their types and finally finding clusters and pathway analysis. 

 

To know more about the course structure and syllabus, visit the link - https://www.coursera.org/learn/data-genes-medicine 


Established in 1636, Harvard is one of the oldest institutions of higher education devoted to excellence in teaching, learning, and research, and to developing leaders in many disciplines who make a difference globally. The Harvard University MOOCs offer numerous online courses in a variety of subjects which can be audited for free by the students or they can choose to receive a verified certificate after payment. 

 

Statistics and R

 

With over 381,510 students enrolled, the Statistics and R for the Life Sciences course is designed to teach students R programming language in the context of statistical data and statistical analysis in the life sciences. The topics covered in the course include introducing the learners to basic exploratory data analysis tools such as histogram, the Q-Q plot, scatter plots, boxplot, stratification, log transforms, and several summary statistics; random variables, the central limit theorem, probability distributions, and p-values. You will also use R to explore advanced topics such as Monte Carlo simulations.

 

To know more about the course structure and syllabus, visit the link - https://www.edx.org/course/statistics-and-r 

 


OmicsLogic is a training program developed by Pine Biotech in collaboration with the Tauber Bioinformatics Research Center from University of Haifa, Israel. OmicsLogic programs are developed using project-based content that is enriched with multimedia content. The programs are divided into 5-10 minute modules with videos, quizzes and assignments that can be completed independently. The training platform also offers several example projects that are sourced from high-impact peer-reviewed publications in the field of oncology, virology, agriculture and infectious disease. With more than 890 students enrolled, the course has an overall rating of 4.2/5. 

Getting started with Bioinformatics in R

The R-Coding Course 1: Getting Started with Bioinformatics is designed for undergraduate and graduate students from life science backgrounds with little or no prior knowledge of R coding for bioinformatics. The topics covered in the course include loading data in R and checking what type of information it contains; data processing and basic visualization packages including boxplots, scatterplots, histograms and bar plots; basics of DNA and how it can be translated to be read in R for analysis; and finally you will also learn how you can create your own complementary strands of DNA using R. 

 

To know more about the course structure and syllabus, visit the link - https://learn.omicslogic.com/courses/course/r-coding-course-1-getting-started-with-bioinformatics 

 

Still facing trouble deciding which course to start with? Check out the table provided below to find which course would be suitable for you based on the prerequisites required before enrolling, duration, price, and the availability of a certificate upon completion of the course.  

 

SL.NO

COURSE NAME

PREREQUISITE

DURATION

PRICE

CERTIFICATION

1

Biology Meets Programming: Bioinformatics for Beginners - University of California San Diego

No prior knowledge of biology or programming is required. A little technical know-how is preferred. 

Approx. 19 hours

Free

Paid Certificate Available

2

Python for Genomic Data Science - Johns Hopkins University

No prior knowledge of Python is required.

Approx. 9 hours

Free

Paid Certificate Available

3

Quantitative Biology Workshop - Massachusetts Institute of Technology

Knowledge of biochemistry, molecular biology, and genetics. Programming experience is not required. 

Approx. 36-72 hours

Free

Paid Certificate Available

4

Python Course 1: Getting Started with Bioinformatics - OmicsLogic

No prior knowledge of Python is required.

Approx. 6 hours

Subscription Based

Paid Certificate Available

5

Big Data, Genes, and Medicine - The State University of New York

Knowledge of biomedical science is required. No prior knowledge of R is required. 

Approx. 40 hours

Free

Paid Certificate Available

6

Statistics and R for the Life Sciences - Harvard University

Basic programming and basic math knowledge is preferred.

Approx. 8-16 hours

Free

Paid Certificate Available

7

R-Coding Course 1: Getting Started with Bioinformatics

No prior knowledge of R is required.

Approx. 6 hours

Subscription Based

Paid Certificate Available

 

If you are still facing trouble deciding on a course, consider enrolling for the upcoming 2-Week Training OmicsLogic Training Program on Getting Started with Bioinformatics in Python (Beginners) and Getting started with Bioinformatics in R (Beginners) that are designed for students and researchers from a life science background who wish to begin their journey in Python/R programming for analyzing biomedical datasets. 


The program will introduce elements of data science in Python/R, such as data wrangling, visualization, statistical analysis, and machine learning. The methods will be reviewed in the context of biomedical and other scientific problems using -omics data. The exercises focus on importing and understanding various data types, transforming them into categorical variables, continuous data and extracting meaningful patterns for visualization. Then, the training continues to include statistical analysis, complex data visualization, machine learning and an introduction to deep learning.

Online courses

During the course of the program, students will gain the following important technical skills:

  • Data wrangling and processing
  • Data visualization using t-SNE & UMAP
  • Dimensionality reduction Methods - PCA, MDS, NMDS
  • Descriptive Statistics and Clustering: K-means & Hierarchical Clustering
  • Dimensionality Reduction and Predictive Models with Deep Learning

 

After completion of the program, students and researchers can begin their career in biomedical data science as bioinformaticians, biomedical data scientists, biomedical data analysts and much more.

 

To enroll for the training program on Getting Started with Bioinformatics in Python (Beginners), visit the link - https://edu.omicslogic.com/getting-started-with-bioinformatics-in-python 

 

 To enroll for the training program on Getting Started with Bioinformatics in R (Beginners), visit the link - https://edu.omicslogic.com/en/getting-started-with-bioinformatics-in-r 

 

To know more about the various courses and programs offered by OmicsLogic, head on to our main portal: https://learn.omicslogic.com/ or write to us at marketing@omicslogic.com. Happy learning!